SNP Profiles of C SUL 7 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CT	AG	CG	CT	CT	AC	CT	GT	CT	CT	AT	AG	CC	AG
1._GC-08-261-8-29	CC	GG	CG	TT	CT	_	CC	GG	CT	CC	AA	AG	CT	AA
2._C_SUL_7	CC	GG	CG	TT	CT	_	CC	GG	CT	CC	AA	AG	CT	AA
3._C_SUL_7	CC	GG	CG	TT	CT	_	CC	GG	CT	CC	AA	AG	CT	AA
4._GC-08-261-8-29	CC	GG	CG	TT	CT	_	CC	GG	CT	CC	AA	AG	CT	AA
5._GC-08-261-8-29	CC	GG	CG	TT	CT	_	CC	GG	CT	CC	AA	AG	CT	AA
6._GC-08-261-8-29	CC	GG	CG	TT	CT	_	CC	GG	CT	CC	AA	AG	CT	AA
7._GC-08-261-8-29	CC	GG	CG	TT	CT	_	CC	GG	CT	CC	AA	AG	CT	AA
8._C_SUL_7	CC	GG	CG	TT	CT	_	CC	GG	CT	CC	AA	AG	CT	AA
9._C_SUL_7	CC	GG	CG	TT	CT	_	CC	GG	CT	CC	AA	AG	CT	AA
10._C_SUL_7	CC	GG	CG	TT	CT	_	CC	GG	CT	CC	AA	AG	CT	AA
11._C_SUL_7	CC	AA	CC	CT	CC	AC	TT	GG	CT	CC	AA	GG	CC	AA
12._NA	CC	AA	CC	CT	CC	AC	TT	GG	CT	CC	AA	GG	CC	AA
13._C_SUL_7	CC	AA	CC	CT	CC	AC	TT	GG	CT	CC	AA	GG	CC	AA
14._NA	CC	AA	CC	CT	CC	AC	TT	GG	CT	CC	AA	GG	CC	AA
15._NA	CC	AA	CC	CT	CC	AC	TT	GG	CT	CC	AA	GG	CC	AA
16._NA	CC	AA	CC	CT	CC	AC	TT	GG	CT	CC	AA	GG	CC	AA
17._NA	CC	AA	CC	CT	CC	AC	TT	GG	CT	CC	AA	GG	CC	AA
18._C_SUL_7	CC	AA	CC	CT	CC	AC	TT	GG	CT	CC	AA	GG	CC	AA
19._C_SUL_7	CC	AA	CC	CT	CC	AC	TT	GG	CT	CC	AA	GG	CC	AA
20._C_SUL_7	CC	AA	CC	CT	CC	AC	TT	GG	CT	CC	AA	GG	CC	AA
21._C_SUL_7	CC	AA	CC	CT	CC	AC	TT	GG	CT	CC	AA	GG	CC	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	TT	AT	GG	CT	CT	GG	GG	AG	TT	CC	CG	GT	CT	AC
1._GC-08-261-8-29	CC	AT	CG	CT	CT	CG	GG	AG	CT	AC	CC	GG	CT	AC
2._C_SUL_7	CC	AT	CG	CT	CT	CG	GG	AG	CT	AC	CC	GG	CT	AC
3._C_SUL_7	CC	AT	CG	CT	CT	CG	GG	AG	CT	AC	CC	GG	CT	AC
4._GC-08-261-8-29	CC	AT	CG	CT	CT	CG	GG	AG	CT	AC	CC	GG	CT	AC
5._GC-08-261-8-29	CC	AT	CG	CT	CT	CG	GG	AG	CT	AC	CC	GG	CT	AC
6._GC-08-261-8-29	CC	AT	CG	CT	CT	CG	GG	AG	CT	AC	CC	GG	CT	AC
7._GC-08-261-8-29	CC	AT	CG	CT	CT	CG	GG	AG	CT	AC	CC	GG	CT	AC
8._C_SUL_7	CC	AT	CG	CT	CT	CG	GG	AG	CT	AC	CC	GG	CT	AC
9._C_SUL_7	CC	AT	CG	CT	CT	CG	GG	AG	CT	AC	CC	GG	CT	AC
10._C_SUL_7	CC	AT	CG	CT	CT	CG	GG	AG	CT	AC	CC	GG	CT	AC
11._C_SUL_7	CC	AT	GG	CT	TT	CG	GT	AG	CC	CC	CC	GG	CC	AC
12._NA	_	AT	GG	_	TT	CG	GT	AA	CC	CC	CC	GG	CC	AC
13._C_SUL_7	_	AT	GG	_	TT	CG	GT	AA	CC	CC	CC	GG	CC	AC
14._NA	CC	AT	GG	CT	TT	CG	GT	AA	CC	CC	CC	GG	CC	AC
15._NA	CC	AT	GG	CT	TT	CG	GT	AA	CC	CC	CC	GG	CC	AC
16._NA	CC	AT	GG	CT	TT	CG	GT	AA	CC	CC	CC	GG	CC	AC
17._NA	CC	AT	GG	CT	TT	CG	GT	AA	CC	CC	CC	GG	CC	AC
18._C_SUL_7	CC	AT	GG	CT	TT	CG	GT	AA	CC	CC	CC	GG	CC	AC
19._C_SUL_7	CC	AT	GG	CT	TT	CG	GT	AA	CC	CC	CC	GG	CC	AC
20._C_SUL_7	CC	AT	GG	CT	TT	CG	GT	AA	CC	CC	CC	GG	CC	AC
21._C_SUL_7	CC	AT	GG	CT	TT	CG	GT	AA	CC	CC	CC	GG	CC	AC

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AG	GG	AT	CC	AA	CG	CC	CT	GT	CC	AT	CG	X_X	X_X
1._GC-08-261-8-29	GG	GG	AA	CT	AA	CG	_	TT	GG	AC	AT	CG	X_X	X_X
2._C_SUL_7	GG	GG	AA	CT	AA	CG	_	TT	GG	AC	AT	CG	X_X	X_X
3._C_SUL_7	GG	GG	AA	CT	AA	CG	AC	TT	GG	AC	AT	CG	X_X	X_X
4._GC-08-261-8-29	GG	GG	AA	CT	AA	CG	AC	TT	GG	AC	AT	CG	X_X	X_X
5._GC-08-261-8-29	GG	GG	AA	CT	AA	CG	AC	TT	GG	AC	AT	CG	X_X	X_X
6._GC-08-261-8-29	GG	GG	AA	CT	AA	CG	AC	TT	GG	AC	AT	CG	X_X	X_X
7._GC-08-261-8-29	GG	GG	AA	CT	AA	CG	AC	TT	GG	AC	AT	CG	X_X	X_X
8._C_SUL_7	GG	GG	AA	CT	AA	CG	AC	TT	GG	AC	AT	CG	X_X	X_X
9._C_SUL_7	GG	GG	AA	CT	AA	CG	AC	TT	GG	AC	AT	CG	X_X	X_X
10._C_SUL_7	GG	GG	AA	CT	AA	CG	AC	TT	GG	AC	AT	CG	X_X	X_X
11._C_SUL_7	GG	GG	AA	CT	AA	CG	CC	TT	GG	AC	AA	GG	X_X	X_X
12._NA	GG	GG	AA	CT	AA	CG	CC	TT	GG	AC	AA	GG	X_X	X_X
13._C_SUL_7	GG	GG	AA	CT	AA	CG	CC	TT	GG	AC	AA	GG	X_X	X_X
14._NA	GG	GG	AA	CT	AA	CG	CC	TT	GG	AC	AA	GG	X_X	X_X
15._NA	GG	GG	AA	CT	AA	CG	CC	TT	GG	AC	AA	GG	X_X	X_X
16._NA	GG	GG	AA	CT	AA	CG	CC	TT	GG	AC	AA	GG	X_X	X_X
17._NA	GG	GG	AA	CT	AA	CG	CC	TT	GG	AC	AA	GG	X_X	X_X
18._C_SUL_7	GG	GG	AA	CT	AA	CG	CC	TT	GG	AC	AA	GG	X_X	X_X
19._C_SUL_7	GG	GG	AA	CT	AA	CG	CC	TT	GG	AC	AA	GG	X_X	X_X
20._C_SUL_7	GG	GG	AA	CT	AA	CG	CC	TT	GG	AC	AA	GG	X_X	X_X
21._C_SUL_7	GG	GG	AA	CT	AA	CG	CC	TT	GG	AC	AA	GG	X_X	X_X

Input profile: C_SUL_7

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

1._C_SUL_7 GC-08-261-8-29

69.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

2._C_SUL_7

69.7 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8829 2

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

3._C_SUL_7

69.2 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8829 5

Dapeng Zhang, 2016

4._C_SUL_7 GC-08-261-8-29

69.2 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

5._C_SUL_7 GC-08-261-8-29

69.2 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

6._C_SUL_7 GC-08-261-8-29

69.2 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

7._C_SUL_7 GC-08-261-8-29

69.2 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

8._C_SUL_7

69.2 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8829 3

Dapeng Zhang, 2016

9._C_SUL_7

69.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8829 4

Dapeng Zhang, 2016

10._C_SUL_7

69.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8829 7

Dapeng Zhang, 2016

11._C_SUL_7

65 %
40 shared markers

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Cocoa Research Institute of Ghana (CRIG), Ghana

Location: P95 583

Dapeng Zhang, 2016

12._C_SUL_7 NA

64.5 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

13._C_SUL_7

64.5 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8129 3

Dapeng Zhang, 2016

14._C_SUL_7 NA

63.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

15._C_SUL_7 NA

63.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

16._C_SUL_7 NA

63.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

17._C_SUL_7 NA

63.8 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

18._C_SUL_7

63.8 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8129 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

19._C_SUL_7

63.8 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8129 5

Dapeng Zhang, 2016

20._C_SUL_7

63.8 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8129 6

Dapeng Zhang, 2016

21._C_SUL_7

63.8 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8129 7

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP151	37	TcSNP150	38	TcSNP144	39	TcSNP32	40	TcSNP25